On *Nix install you can run configServer.sh found in /opt/skybot/server by default.
./configServer.sh –s[Install Dir],-pES[SERVER_PORT_NUMBER],-pDB[POSTGRES_PORT_NUMBER],-pSD[SHUTDOWN_PORT_NUMBER],-pSS[SSL_PORT_NUMBER],-pAJ[AJP13_PORT_NUMBER]
Install dir is optional if you used the default on install. All port parms are also optional, just specify the one(s) you want to change.
On Windows, run the Skybot Scheduler Configuration.exe found in
C:\Program Files (x86)\Skybot\Skybot Scheduler by default